Kingdom Protozoa Goldfuss, 1818 - protozoa
  
 Subkingdom Corticata Lankester, 1878
 see Subkingdom Biciliata
    
 Infrakingdom Excavata T. Cavalier-Smith, 2002
 see Supergroup Excavata Cavalier-Smith, 2002
      
 Superphylum Eozoa Cavalier-Smith, 1997
 see Infrakingdom Eozoa Cavalier-Smith, 1997
        
 Phylum Metamonada Grassé, 1952
          
 Subphylum Trichozoa Cavalier-Smith, 1997
            
 Superclass Eopharyngia (Cavalier-Smith, 1993) Cavalier-Smith, 2003
              
 Class Trepomonadea Cavalier-Smith, 1993
                
 Subclass Diplozoa (Dangeard, 1910) Cavalier-Smith, 1996 - diplomonads
 see Order Diplomonadida Wenyon, 1926
                  
 Order Giardiida Cavalier-Smith, 1996
 see Subfamily Giardiinae Kulda & Nohýnková, 1978
                    
 1 Genus Giardia Künstler, 1882
                    
 2 Genus Octomitus Prowazek, 1904